Christine Graeme raised concern over the figures
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The length of time prisoners spent behind bars for crimes of indecency reached a five-year low last year.
The average number of days spent in custody for offences including rape and lewd behaviour in 2005-06 was 1,038, according to official statistics.
Nationalist MSP Christine Grahame, who obtained the figures, called for a review on sentencing guidance.
However ministers said sentence lengths based on a relatively small number of cases were expected to fluctuate.
The figures, obtained through a parliamentary question, also took in sentences for indecent assault, which included attempted rape, and "other crimes of indecency".
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AVERAGE TIME IN CUSTODY FOR CRIMES OF INDECENCY
2001-02: 1,203 days
2002-03: 1,253 days
2003-04: 1,081 days
2004-05: 1,295 days
2005-06: 1,038 days
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The statistics, which excluded life sentences, showed fluctuations in the average number of custodial days served for indecent crimes to be relatively small.
The figure stood at 1,203 in 2001-02 and rose and fell in subsequent years.
Despite this, Ms Grahame, who represents the south of Scotland, said: "These figures highlight a downward trend in the length of time convicted sex offenders are spending in jail and I think that sends the wrong message to victims of such crimes, in terms of encouraging them to come forward to report incidents.
"Equally I believe it sends entirely the wrong message to both perpetrators and victims that such offences are not being dealt with as firmly as they once were."
A statement by community safety minister Fergus Ewing accompanying the figures said: "Average sentence lengths based on [a] relatively small total number of cases can be expected to fluctuate from year to year."